Digital Empires: Civilization Indians
You can read Stephen's posting at the source, so I'll just quote some highlights:
Possibly the worst blunder in Civilization III, according to Stephen:
"Iroquois leader Hiawatha circa the European Renaissance."
Civilization IV and V
For more on the subject, see Natives Criticize Sid Meier's Colonization and Colonization the Video Game. For more on the subject in general, see Video Games Featuring Indians.
Below: Screenshot from Civilization III.